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    LOC101326200 nuclear autoantigen Sp-100-like [ Tursiops truncatus (common bottlenose dolphin) ]

    Gene ID: 101326200, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101326200
    Gene description
    nuclear autoantigen Sp-100-like
    See related
    EnsemblRapid:ENSTTRG00000014242
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tursiops truncatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current mTurTru1.mat.Y (GCF_011762595.1) 7 NC_047040.1 (8913744..8998410, complement)
    101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017844682.1 (7138167..7217862, complement)

    Chromosome 7 - NC_047040.1Genomic Context describing neighboring genes Neighboring gene calcium binding protein 39 Neighboring gene uncharacterized LOC109548021 Neighboring gene uncharacterized LOC117312928 Neighboring gene uncharacterized LOC117312929 Neighboring gene nuclear body protein SP140-like protein Neighboring gene uncharacterized LOC109548018 Neighboring gene SP110 nuclear body protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear autoantigen Sp-100-like; nuclear body protein SP140-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mTurTru1.mat.Y Primary Assembly

    Genomic

    1. NC_047040.1 Reference mTurTru1.mat.Y Primary Assembly

      Range
      8913744..8998410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033859564.1 → XP_033715455.1  nuclear autoantigen Sp-100-like isoform X3

      UniProtKB/TrEMBL
      A0A6J3RLD0
      Conserved Domains (3) summary
      cd15626
      Location:460 → 501
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:370 → 445
      SAND; SAND domain
      pfam03172
      Location:24 → 119
      HSR; HSR domain

    2. XM_033859563.1 → XP_033715454.1  nuclear autoantigen Sp-100-like isoform X2

      UniProtKB/TrEMBL
      A0A6J3RM74
      Conserved Domains (3) summary
      cd15626
      Location:463 → 504
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:373 → 448
      SAND; SAND domain
      pfam03172
      Location:24 → 122
      HSR; HSR domain

    3. XM_033859562.1 → XP_033715453.1  nuclear body protein SP140-like protein isoform X1

      UniProtKB/TrEMBL
      A0A6J3RMQ8
      Related
      ENSTTRP00000013509.2, ENSTTRT00000014252.2
      Conserved Domains (3) summary
      cd15626
      Location:470 → 511
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:380 → 455
      SAND; SAND domain
      pfam03172
      Location:24 → 119
      HSR; HSR domain

    4. XM_033859566.1 → XP_033715457.1  nuclear body protein SP140-like protein isoform X5

      UniProtKB/TrEMBL
      A0A6J3RLH0
      Conserved Domains (3) summary
      cd15626
      Location:441 → 482
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:351 → 426
      SAND; SAND domain
      pfam03172
      Location:24 → 119
      HSR; HSR domain

    5. XM_033859565.1 → XP_033715456.1  nuclear body protein SP140-like protein isoform X4

      UniProtKB/TrEMBL
      A0A6J3RKX9
      Conserved Domains (3) summary
      cd15626
      Location:442 → 483
      PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
      pfam01342
      Location:352 → 427
      SAND; SAND domain
      pfam03172
      Location:24 → 119
      HSR; HSR domain

    RNA

    1. XR_004527340.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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