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    LOC101061434 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [ Takifugu rubripes (torafugu) ]

    Gene ID: 101061434, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC101061434
    Gene description
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
    See related
    Ensembl:ENSTRUG00000006702
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Also known as
    smarce1
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    Genomic context

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    See LOC101061434 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 17 NC_042301.1 (5233213..5238575)
    101 previous assembly FUGU5 (GCF_000180615.1) 17 NC_018906.1 (3378726..3384704, complement)

    Chromosome 17 - NC_042301.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein Eos Neighboring gene insulin like growth factor binding protein 4 Neighboring gene chemokine (C-C motif) receptor 7 Neighboring gene tensin 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042301.1 Reference fTakRub1.2 Primary Assembly

      Range
      5233213..5238575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029851420.1 → XP_029707280.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X4

      UniProtKB/TrEMBL
      H2SVN0

    2. XM_029851418.1 → XP_029707278.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2

      UniProtKB/TrEMBL
      H2SVN0

    3. XM_029851419.1 → XP_029707279.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X3

      UniProtKB/TrEMBL
      H2SVN0
      Conserved Domains (1) summary
      cd01390
      Location:55 → 116
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    4. XM_003972144.3 → XP_003972193.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

      UniProtKB/TrEMBL
      H2SVN0
      Related
      ENSTRUP00000016468.3, ENSTRUT00000016540.3
      Conserved Domains (1) summary
      cd01390
      Location:70 → 131
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    Nucleotide Protein
    Heading Accession and Version

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