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    SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100189743, updated on 3-Apr-2024

    Summary

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    Gene symbol
    SMARCE1
    Gene description
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
    Locus tag
    CR201_G0012519
    See related
    Ensembl:ENSPPYG00000008456
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    DKFZP459C0539
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 19 NC_072004.2 (70906407..70927216, complement)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) Unplaced Scaffold NW_026537337.1 (11139255..11160062, complement)

    Chromosome 19 - NC_072004.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134760597 Neighboring gene C-C motif chemokine receptor 7 Neighboring gene keratin 222 Neighboring gene keratin, type I cytoskeletal 24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135357.1 → NP_001128829.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

      See identical proteins and their annotated locations for NP_001128829.1

      Status: PROVISIONAL

      Source sequence(s)
      CR859528
      UniProtKB/TrEMBL
      A0A8I5T4P4, Q5R964
      Related
      ENSPPYP00000043887.1, ENSPPYT00000053362.1
      Conserved Domains (1) summary
      cd01390
      Location:35 → 96
      HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...

    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_072004.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      70906407..70927216 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009251801.4 → XP_009250076.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

      See identical proteins and their annotated locations for XP_009250076.1

      UniProtKB/TrEMBL
      A0A6D2Y3E7, A0A8I5T4P4
      Conserved Domains (3) summary
      PTZ00121
      Location:110 → 411
      PTZ00121; MAEBL; Provisional
      COG3883
      Location:227 → 320
      CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
      cd01390
      Location:70 → 131
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    2. XM_054546242.2 → XP_054402217.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I5YRA9

    3. XM_054546243.2 → XP_054402218.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X3

      UniProtKB/TrEMBL
      A0A2J8WAG1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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