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    per2 period circadian regulator 2 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101158624, updated on 9-Nov-2023

    Summary

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    Gene symbol
    per2
    Gene description
    period circadian regulator 2
    See related
    EnsemblRapid:ENSORLG00000015456
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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    Genomic context

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    See per2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 13 NC_019871.2 (31712242..31729042, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 13 NC_019871.1 (31738786..31753870, complement)

    Chromosome 13 - NC_019871.2Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(I) chain-like Neighboring gene hairy-related 8.2 Neighboring gene hairy-related 13 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta Neighboring gene uncharacterized LOC110016271 Neighboring gene forkhead box L2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in circadian regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in entrainment of circadian clock by photoperiod IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    period circadian protein homolog 2
    Names
    period circadian clock 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019871.2 Reference ASM223467v1 Primary Assembly

      Range
      31712242..31729042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020708536.2 → XP_020564195.1  period circadian protein homolog 2

      UniProtKB/TrEMBL
      H2MKY1
      Related
      ENSORLP00000019352.3, ENSORLT00000019353.3
      Conserved Domains (3) summary
      pfam12114
      Location:1226 → 1408
      Period_C; Period protein 2/3C-terminal region
      cl25986
      Location:379 → 480
      PAS_3; PAS fold
      cl26464
      Location:882 → 1149
      Atrophin-1; Atrophin-1 family

    2. XM_011483049.3 → XP_011481351.2  period circadian protein homolog 2

      UniProtKB/TrEMBL
      H2MKY1
      Conserved Domains (3) summary
      pfam12114
      Location:1226 → 1408
      Period_C; Period protein 2/3C-terminal region
      cl25986
      Location:379 → 480
      PAS_3; PAS fold
      cl26464
      Location:882 → 1149
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

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