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    SALL2 spalt like transcription factor 2 [ Equus caballus (horse) ]

    Gene ID: 100072732, updated on 8-Mar-2024

    Summary

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    Official Symbol
    SALL2provided by VGNC
    Official Full Name
    spalt like transcription factor 2provided by VGNC
    Primary source
    VGNC:VGNC:22670
    See related
    Ensembl:ENSECAG00000024449
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (159923679..159939090, complement)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 1 NC_009144.2 (158307080..158320243, complement)

    Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene TOX high mobility group box family member 4 Neighboring gene methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit Neighboring gene uncharacterized LOC106782116 Neighboring gene 40S ribosomal protein S29 pseudogene Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sal-like protein 2
    Names
    sal-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009144.3 Reference EquCab3.0 Primary Assembly

      Range
      159923679..159939090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014734068.2 → XP_014589554.1  sal-like protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A9L0TMJ4
      Conserved Domains (3) summary
      sd00017
      Location:376 → 396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:693 → 714
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:388 → 413
      zf-H2C2_2; Zinc-finger double domain

    2. XM_001505164.4 → XP_001505214.1  sal-like protein 2 isoform X1

      See identical proteins and their annotated locations for XP_001505214.1

      UniProtKB/TrEMBL
      A0A9L0TMJ4, F6WHM4
      Related
      ENSECAP00000021923.3, ENSECAT00000026292.4
      Conserved Domains (3) summary
      sd00017
      Location:376 → 396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:693 → 714
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:388 → 413
      zf-H2C2_2; Zinc-finger double domain

    3. XM_005603211.3 → XP_005603268.1  sal-like protein 2 isoform X3

      See identical proteins and their annotated locations for XP_005603268.1

      UniProtKB/TrEMBL
      A0A9L0SQN6, A0A9L0TMJ4
      Related
      ENSECAP00000078371.1, ENSECAT00000145003.1
      Conserved Domains (3) summary
      sd00017
      Location:336 → 356
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:653 → 674
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:348 → 373
      zf-H2C2_2; Zinc-finger double domain

    4. XM_014734069.2 → XP_014589555.1  sal-like protein 2 isoform X5

      UniProtKB/TrEMBL
      A0A9L0TMJ4
      Conserved Domains (3) summary
      sd00017
      Location:374 → 394
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:691 → 712
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:386 → 411
      zf-H2C2_2; Zinc-finger double domain

    5. XM_014734067.2 → XP_014589553.1  sal-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A9L0SJC8, A0A9L0TMJ4
      Related
      ENSECAP00000074967.1, ENSECAT00000088866.1
      Conserved Domains (3) summary
      sd00017
      Location:374 → 394
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:691 → 712
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:386 → 411
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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