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    HOXD13 homeobox D13 [ Equus caballus (horse) ]

    Gene ID: 100146425, updated on 8-Mar-2024

    Summary

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    Official Symbol
    HOXD13provided by VGNC
    Official Full Name
    homeobox D13provided by VGNC
    Primary source
    VGNC:VGNC:51459
    See related
    Ensembl:ENSECAG00000020388
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See HOXD13 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 18 NC_009161.3 (54588805..54592262)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 18 NC_009161.2 (54553049..54555973)

    Chromosome 18 - NC_009161.3Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S4-like Neighboring gene even-skipped homeobox 2 Neighboring gene homeobox D12 Neighboring gene homeobox D11 Neighboring gene homeobox D10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-D13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009161.3 Reference EquCab3.0 Primary Assembly

      Range
      54588805..54592262
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014732278.2 → XP_014587764.2  homeobox protein Hox-D13

      UniProtKB/TrEMBL
      F7CJC1
      Related
      ENSECAP00000017825.2, ENSECAT00000021633.3
      Conserved Domains (2) summary
      pfam00046
      Location:277 → 331
      Homeobox; Homeobox domain
      pfam12284
      Location:99 → 170
      HoxA13_N; Hox protein A13 N terminal
    Nucleotide Protein
    Heading Accession and Version

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