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    snail transcription factor protein [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 778762, updated on 21-Dec-2023

    Summary

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    Gene symbol
    snail
    Gene description
    transcription factor protein
    See related
    Ensembl:ENSCING00000008903
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
    Also known as
    Zfp27; Ci-snail
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 3 NC_020168.2 (5679284..5682504)

    Chromosome 3 - NC_020168.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100179491 Neighboring gene putative sodium-coupled neutral amino acid transporter 7 Neighboring gene actin, cytoplasmic-like Neighboring gene amine sulfotransferase Neighboring gene amine sulfotransferase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020168.2 Chromosome 3 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Snail mediates medial-lateral patterning of the ascidian neural plate. Hudson C, et al. Dev Biol, 2015 Jul 15. PMID 25962578
    2. Dorsoventral patterning of the vertebrate neural tube is conserved in a protochordate. Corbo JC, et al. Development, 1997 Jun. PMID 9199360
    3. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
    4. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
    5. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor protein
    Names
    snail homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078353.1 → NP_001071821.1  transcription factor protein

      See identical proteins and their annotated locations for NP_001071821.1

      Status: PREDICTED

      Source sequence(s)
      AB210695
      UniProtKB/TrEMBL
      A0A1W2VRZ5, F6QBI4, Q4H2S7
      Related
      ENSCINP00000018113, ENSCINT00000018113
      Conserved Domains (3) summary
      sd00017
      Location:495 → 515
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:521 → 543
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:508 → 531
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020168.2 Reference KH Primary Assembly

      Range
      5679284..5682504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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