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    zf(c2h2)-26 zinc finger protein [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 778813, updated on 21-Dec-2023

    Summary

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    Gene symbol
    zf(c2h2)-26
    Gene description
    zinc finger protein
    See related
    Ensembl:ENSCING00000001724
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See zf(c2h2)-26 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 3 NC_020168.2 (1465279..1473866)

    Chromosome 3 - NC_020168.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104265504 Neighboring gene uncharacterized LOC778738 Neighboring gene uncharacterized protein KIAA0895-like Neighboring gene dynein regulatory complex subunit 3-like Neighboring gene 72 kDa type IV collagenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020168.2 Chromosome 3 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
    2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
    3. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078400.1 → NP_001071868.1  zinc finger protein

      See identical proteins and their annotated locations for NP_001071868.1

      Status: PROVISIONAL

      Source sequence(s)
      AB210783
      UniProtKB/TrEMBL
      A0A1W2VNQ6, F6TVE9, Q4H2I9
      Related
      ENSCINP00000003482, ENSCINT00000003482
      Conserved Domains (2) summary
      sd00017
      Location:596 → 616
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:377 → 402
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020168.2 Reference KH Primary Assembly

      Range
      1465279..1473866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026833562.1 → XP_026689363.1  zinc finger protein isoform X1

      UniProtKB/TrEMBL
      F6TVE9
      Conserved Domains (2) summary
      sd00017
      Location:450 → 470
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:231 → 256
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials