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    LOC445804 uncharacterized LOC445804 [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 445804, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC445804
    Gene description
    uncharacterized LOC445804
    See related
    Ensembl:ENSCING00000001019
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
    Also known as
    soxE; Sox10
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190398.2 (87243..97106)

    NW_004190398.2Genomic Context describing neighboring genes Neighboring gene putative L-aspartate dehydrogenase Neighboring gene transcription factor protein Neighboring gene uncharacterized LOC108950253 Neighboring gene guanine nucleotide-binding protein G(q) subunit alpha Neighboring gene prostaglandin reductase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004190398 Unplaced Scaffold Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
    2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in morphogenesis of an epithelium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC445804

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NW_004190398.2 Reference KH Primary Assembly

      Range
      87243..97106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002122197.5 → XP_002122233.2  uncharacterized protein LOC445804

      UniProtKB/TrEMBL
      Q70W02
      Related
      ENSCINP00000001889
      Conserved Domains (3) summary
      cd01388
      Location:221 → 291
      SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
      pfam12444
      Location:153 → 211
      Sox_N; Sox developmental protein N terminal
      pfam16609
      Location:209 → 435
      SH3-RhoG_link; SH3-RhoGEF linking unstructured region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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