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VHA-E3 vacuolar H+-ATPase subunit E isoform 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842725, updated on 15-Feb-2024

Summary

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Gene symbol
VHA-E3
Gene description
vacuolar H+-ATPase subunit E isoform 3
Primary source
Araport:AT1G64200
Locus tag
AT1G64200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22C12.4; F22C12_4; vacuolar H+-ATPase subunit E isoform 3
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (23828284..23830100, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 6-phosphogluconate dehydrogenase family protein Neighboring gene ncRNA Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene translocase of outer membrane 7 kDa subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional analysis of Arabidopsis V-ATPase subunit VHA-E isoforms. Dettmer J, et al. Eur J Cell Biol, 2010 Feb-Mar. PMID 19945769
  2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
  3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001334150.1
NM_105094.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
part_of proton-transporting two-sector ATPase complex, catalytic domain IEA
Inferred from Electronic Annotation
more info
  
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
vacuolar H+-ATPase subunit E isoform 3
NP_176602.1
  • vacuolar H+-ATPase subunit E isoform 3 (VHA-E3); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, mitochondrial proton-transporting ATP synthase complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit E1 (TAIR:AT4G11150.1); Has 792 Blast hits to 792 proteins in 304 species: Archae - 92; Bacteria - 13; Metazoa - 250; Fungi - 149; Plants - 127; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    23828284..23830100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334149.1 → NP_001320763.1  vacuolar H+-ATPase subunit E isoform 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANX8, A0A7G2E3W5

  2. NM_105094.3 → NP_176602.1  vacuolar H+-ATPase subunit E isoform 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176602.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0CAN7
    UniProtKB/TrEMBL
    A0A7G2E3W5
    Conserved Domains (2) summary
    COG1390
    Location:10 → 232
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam01991
    Location:16 → 231
    vATP-synt_E; ATP synthase (E/31 kDa) subunit

  3. NM_001334150.1 → NP_001320764.1  vacuolar H+-ATPase subunit E isoform 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANV6, A0A7G2E3W5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CAN7.1

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