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AT4G15475 F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827219, updated on 7-Sep-2023

Summary

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Gene symbol
AT4G15475
Gene description
F-box/RNI-like superfamily protein
Primary source
Araport:AT4G15475
Locus tag
AT4G15475
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (8845812..8848869)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Senescence/dehydration-associated protein-like protein Neighboring gene glycine-rich protein Neighboring gene Bax inhibitor-1 family protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene UDP-Glycosyltransferase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RAD7 homologues contribute to Arabidopsis UV tolerance. Lahari T, et al. Plant Sci, 2018 Dec. PMID 30466592
  2. F-box proteins in Arabidopsis. Xiao W, et al. Trends Plant Sci, 2000 Nov. PMID 11077244
  3. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_117637.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within nucleotide-excision repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to UV-C IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
F-box/RNI-like superfamily protein
NP_567467.1
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8845812..8848869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117637.5 → NP_567467.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567467.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23399, Q8LGK0, Q9C5D2
    UniProtKB/TrEMBL
    A0A5S9XSR2
    Conserved Domains (3) summary
    cd09293
    Location:448 → 586
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:374 → 399
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam12937
    Location:9 → 42
    F-box-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C5D2.1

Gene LinkOut

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