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NS2 asparaginyl-tRNA synthetase 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819930, updated on 18-Sep-2024

Summary

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Official Symbol
NS2
Official Full Name
asparaginyl-tRNA synthetase 2
Primary source
TAIR:AT3G07420
Locus tag
AT3G07420
See related
Araport:AT3G07420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
asparaginyl-tRNA synthetase 2; ASPARAGINYL-TRNA SYNTHETASE 2; ATNS2; SYNC2; SYNC2_ARATH; SYNTHETASE C2
Summary
Encodes an asparaginyl-tRNA synthetase.
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (2373913..2376975, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene auxin-induced in root cultures-like protein Neighboring gene lipase class 3 family protein Neighboring gene RAB GTPase homolog A5B Neighboring gene uncharacterized protein Neighboring gene YGGT family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and expression of an asparaginyl-tRNA synthetase gene located on chromosome IV of Arabidopsis thaliana and adjacent to a novel gene of 15 exons. Aubourg S, et al. Biochim Biophys Acta, 1998 Jul 9. PMID 9655910
  2. Duplication and quadruplication of Arabidopsis thaliana cysteinyl- and asparaginyl-tRNA synthetase genes of organellar origin. Peeters NM, et al. J Mol Evol, 2000 May. PMID 10824085
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001337712.1
NM_111621.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables aminoacyl-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables asparagine-tRNA ligase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within asparaginyl-tRNA aminoacylation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in tRNA aminoacylation for protein translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
asparaginyl-tRNA synthetase 2
NP_187398.1
  • asparaginyl-tRNA synthetase 2 (NS2); CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT5G56680.1); Has 9059 Blast hits to 7126 proteins in 1951 species: Archae - 376; Bacteria - 6198; Metazoa - 478; Fungi - 585; Plants - 210; Viruses - 0; Other Eukaryotes - 1212 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2373913..2376975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111621.4 → NP_187398.1  asparaginyl-tRNA synthetase 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187398.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48594, Q8GZ48, Q9SRS4, Q9SW95
    UniProtKB/TrEMBL
    A0A178VCZ7, A0A5S9XA29
    Conserved Domains (1) summary
    PLN02532
    Location:1 → 638
    PLN02532; asparagine-tRNA synthetase

  2. NM_001337712.1 → NP_001326578.1  asparaginyl-tRNA synthetase 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LPQ1, A0A5S9XA29
    Conserved Domains (1) summary
    PLN02532
    Location:1 → 516
    PLN02532; asparagine-tRNA synthetase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SW95.2

Gene LinkOut

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