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Slp sloppy-paired [ Tribolium castaneum (red flour beetle) ]

Gene ID: 662438, updated on 12-Apr-2024

Summary

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Gene symbol
Slp
Gene description
sloppy-paired
Locus tag
TcasGA2_TC008062
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Also known as
FD7; bf-1; slp-2
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Genomic context

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Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 9 NC_087402.1 (4551722..4552657)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG4 NC_007419.2 (4434736..4435671)

Chromosome 9 - NC_087402.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-glucuronyltransferase 1 Neighboring gene lethal-(2)-denticleless Neighboring gene uncharacterized LOC107397737 Neighboring gene uncharacterized LOC107397739

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary flexibility of pair-rule patterning revealed by functional analysis of secondary pair-rule genes, paired and sloppy-paired in the short-germ insect, Tribolium castaneum. Choe CP, et al. Dev Biol, 2007 Feb 1. PMID 17054935, Free PMC Article
  2. A pair-rule gene circuit defines segments sequentially in the short-germ insect Tribolium castaneum. Choe CP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16611732, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sloppy-paired
Names
AUGUSTUS-3.0.2_08062
GLEAN_08062
sloppy-paired 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077623.1 → NP_001071091.1  sloppy-paired

    See identical proteins and their annotated locations for NP_001071091.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ414248
    UniProtKB/TrEMBL
    D1ZZK3, Q1KV09
    Conserved Domains (1) summary
    smart00339
    Location:86 → 171
    FH; FORKHEAD

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087402.1 Reference icTriCast1.1 Primary Assembly

    Range
    4551722..4552657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases