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thoc2 THO complex 2 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 590807, updated on 14-Dec-2023

Summary

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Symbol
thoc2
Full Name
THO complex 2
Primary source
EchinoBase:ECB-GENE-23047556
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145596.1 (24666295..24726442)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577618.1 (281475..342059)

NW_022145596.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC583716 Neighboring gene uncharacterized LOC115922302 Neighboring gene GTP binding protein 8 (putative) Neighboring gene uncharacterized LOC115922303

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of THO complex part of transcription export complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THO complex subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145596.1 Reference Spur_5.0 Primary Assembly

    Range
    24666295..24726442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030980942.1 → XP_030836802.1  THO complex subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A7M7NHS8
    Conserved Domains (4) summary
    PTZ00121
    Location:1318 → 1637
    PTZ00121; MAEBL; Provisional
    pfam11262
    Location:868 → 1167
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam11732
    Location:561 → 635
    Thoc2; Transcription- and export-related complex subunit
    pfam16134
    Location:7 → 559
    THOC2_N; THO complex subunit 2 N-terminus

  2. XM_030980943.1 → XP_030836803.1  THO complex subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A7M7NK49
    Conserved Domains (4) summary
    pfam07263
    Location:1357 → 1556
    DMP1; Dentin matrix protein 1 (DMP1)
    pfam11262
    Location:868 → 1167
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam11732
    Location:561 → 635
    Thoc2; Transcription- and export-related complex subunit
    pfam16134
    Location:7 → 559
    THOC2_N; THO complex subunit 2 N-terminus
Nucleotide Protein
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