U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC585554 DNA-binding protein RFX6 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 585554, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC585554
Gene description
DNA-binding protein RFX6
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145606.1 (21482015..21515971, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577869.1 (62862..95765)

NW_022145606.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome non-ATPase regulatory subunit 2 Neighboring gene uncharacterized LOC100893473 Neighboring gene U11/U12 small nuclear ribonucleoprotein 35 kDa protein Neighboring gene zinc transporter ZIP12-like Neighboring gene uncharacterized LOC115927290

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA-binding protein RFX6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145606.1 Reference Spur_5.0 Primary Assembly

    Range
    21482015..21515971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_785376.5 → XP_790469.2  DNA-binding protein RFX6

    UniProtKB/TrEMBL
    A0A7M7RG09
    Conserved Domains (1) summary
    pfam02257
    Location:100 → 173
    RFX_DNA_binding; RFX DNA-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases