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PICST_54813 transcription factor SKN7 [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4837023, updated on 21-Dec-2023

Summary

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Gene symbol
PICST_54813
Gene description
transcription factor SKN7
Locus tag
PICST_54813
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See PICST_54813 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_009042.1 (1358779..1359123, complement)

Chromosome 2 - NC_009042.1Genomic Context describing neighboring genes Neighboring gene ribonucleoside-diphosphate reductase alpha subunit Neighboring gene hypothetical protein Neighboring gene Mitochondrial GTPase 2 Neighboring gene Dead-Box Protein 8, ATP-dependent helicase involved in rRNA processing

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009042.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
transcription factor SKN7
XP_001383027.2
  • go_funtion two-component response regulator activity; DNA binding
    go_process two-component signal transduction system (phosphorelay); regulation of transcription, DNA-dependent

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009042.1 Reference assembly

    Range
    1358779..1359123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001382990.1 → XP_001383027.2  transcription factor SKN7, partial [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001383027.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A3LP85
    Conserved Domains (1) summary
    cd00156
    Location:1 → 110
    REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
Nucleotide Protein
Heading Accession and Version

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