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PITX1 paired like homeodomain 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 462072, updated on 29-Mar-2024

Summary

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Official Symbol
PITX1provided by VGNC
Official Full Name
paired like homeodomain 1provided by VGNC
Primary source
VGNC:VGNC:7100
Locus tag
CK820_G0026698
See related
Ensembl:ENSPTRG00000017254
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (132770060..132776704, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (132790290..132796798, complement)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene thioredoxin domain containing 15 Neighboring gene pterin-4 alpha-carbinolamine dehydratase 2 Neighboring gene cation channel sperm associated 3 Neighboring gene uncharacterized LOC101057750 Neighboring gene uncharacterized LOC107974869 Neighboring gene macroH2A.1 histone

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pituitary homeobox 1
Names
paired-like homeodomain transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    132770060..132776704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001168135.6 → XP_001168135.1  pituitary homeobox 1

    See identical proteins and their annotated locations for XP_001168135.1

    UniProtKB/TrEMBL
    A0A2J8LRP3, A0A6D2WHV9, H2QRI7
    Related
    ENSPTRP00000029514.4
    Conserved Domains (3) summary
    COG5576
    Location:36 → 146
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:93 → 146
    Homeobox; Homeobox domain
    pfam03826
    Location:276 → 293
    OAR; OAR domain
Nucleotide Protein
Heading Accession and Version

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