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CCS copper chaperone for superoxide dismutase [ Canis lupus familiaris (dog) ]

Gene ID: 442988, updated on 17-Aug-2024

Summary

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Official Symbol
CCSprovided by VGNC
Official Full Name
copper chaperone for superoxide dismutaseprovided by VGNC
Primary source
VGNC:VGNC:38919
See related
Ensembl:ENSCAFG00845012574
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CCS in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (51779215..51791116, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (49356795..49367915, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (51250671..51261786, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (50880987..50892100, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (50460685..50471934, complement)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 4B Neighboring gene RNA binding motif protein 14 Neighboring gene uncharacterized LOC106559991 Neighboring gene coiled-coil domain containing 87 Neighboring gene cathepsin F Neighboring gene actinin alpha 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
copper chaperone for superoxide dismutase
Names
superoxide dismutase copper chaperone

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001194970.1 → NP_001181899.1  copper chaperone for superoxide dismutase

    Status: VALIDATED

    Source sequence(s)
    JAAUVH010000176
    UniProtKB/TrEMBL
    A0A8C0KNG4, A0A8C0SJL5, A0A8I3NJ97, A0A8I3NLT0, A0A8P0NEL2
    Related
    ENSCAFP00845017615.1, ENSCAFT00845022423.1
    Conserved Domains (1) summary
    cl00891
    Location:14 → 253
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    51779215..51791116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038423391.1 → XP_038279319.1  copper chaperone for superoxide dismutase isoform X1

    UniProtKB/TrEMBL
    A0A8I3NLT0, A0A8P0NEL2
    Conserved Domains (1) summary
    PLN02957
    Location:1 → 234
    PLN02957; copper, zinc superoxide dismutase

  2. XM_038423390.1 → XP_038279318.1  copper chaperone for superoxide dismutase isoform X1

    UniProtKB/TrEMBL
    A0A8I3NLT0, A0A8P0NEL2
    Conserved Domains (1) summary
    PLN02957
    Location:1 → 234
    PLN02957; copper, zinc superoxide dismutase

  3. XM_038423394.1 → XP_038279322.1  copper chaperone for superoxide dismutase isoform X4

    UniProtKB/TrEMBL
    A0A8I3NLT0, A0A8P0NEL2
    Conserved Domains (1) summary
    cd00305
    Location:40 → 178
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

  4. XM_038423395.1 → XP_038279323.1  copper chaperone for superoxide dismutase isoform X4

    UniProtKB/TrEMBL
    A0A8I3NLT0, A0A8P0NEL2
    Conserved Domains (1) summary
    cd00305
    Location:40 → 178
    Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

  5. XM_038423393.1 → XP_038279321.1  copper chaperone for superoxide dismutase isoform X3

    UniProtKB/TrEMBL
    A0A8I3NLT0, A0A8P0NEL2
    Conserved Domains (1) summary
    PLN02957
    Location:4 → 218
    PLN02957; copper, zinc superoxide dismutase

  6. XM_038423392.1 → XP_038279320.1  copper chaperone for superoxide dismutase isoform X2

    UniProtKB/TrEMBL
    A0A8I3NLT0, A0A8P0NEL2
    Conserved Domains (1) summary
    PLN02957
    Location:8 → 223
    PLN02957; copper, zinc superoxide dismutase

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    50880987..50892100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    50460685..50471934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    51250671..51261786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    49356795..49367915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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