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LHX1 LIM homeobox 1 [ Felis catus (domestic cat) ]

Gene ID: 101083467, updated on 8-Mar-2024

Summary

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Official Symbol
LHX1
Official Full Name
LIM homeobox 1
Primary source
VGNC:VGNC:99183
See related
EnsemblRapid:ENSFCTG00005012187
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: E1
Exon count:
5
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) E1 NC_058381.1 (24268364..24276104, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) E1 NC_018736.3 (24334084..24341221, complement)

Chromosome E1 - NC_058381.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene U2 spliceosomal RNA Neighboring gene apoptosis antagonizing transcription factor Neighboring gene uncharacterized LOC109494289 Neighboring gene uncharacterized LOC123382050 Neighboring gene uncharacterized LOC123382049

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM/homeobox protein Lhx1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058381.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    24268364..24276104 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003996587.5 → XP_003996636.1  LIM/homeobox protein Lhx1

    See identical proteins and their annotated locations for XP_003996636.1

    UniProtKB/TrEMBL
    A0A2I2V4T1
    Related
    ENSFCTP00005023530.1, ENSFCTT00005034532.1
    Conserved Domains (4) summary
    cd09367
    Location:4 → 55
    LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
    cd09375
    Location:63 → 118
    LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
    PRK14086
    Location:263 → 382
    dnaA; chromosomal replication initiator protein DnaA
    pfam00046
    Location:183 → 237
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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