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LMX1A LIM homeobox transcription factor 1 alpha [ Felis catus (domestic cat) ]

Gene ID: 101081519, updated on 8-Mar-2024

Summary

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Official Symbol
LMX1A
Official Full Name
LIM homeobox transcription factor 1 alpha
Primary source
VGNC:VGNC:68076
See related
EnsemblRapid:ENSFCTG00005002399
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See LMX1A in Genome Data Viewer
Location:
chromosome: F1
Exon count:
10
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) F1 NC_058384.1 (60212739..60373925)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) F1 NC_018739.3 (62548001..62710267)

Chromosome F1 - NC_058384.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109495774 Neighboring gene uncharacterized LOC102901450 Neighboring gene retinoid X receptor gamma Neighboring gene uncharacterized LOC123382758 Neighboring gene uncharacterized LOC109495778 Neighboring gene uncharacterized LOC123382698 Neighboring gene PBX homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM homeobox transcription factor 1-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058384.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    60212739..60373925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023247554.2 → XP_023103322.1  LIM homeobox transcription factor 1-alpha

    UniProtKB/TrEMBL
    A0A337SI88, M3WTY4
    Related
    ENSFCTP00005004066.1, ENSFCTT00005006381.1
    Conserved Domains (3) summary
    cd09370
    Location:35 → 86
    LIM1_Lmx1a; The first LIM domain of Lmx1a
    cd09378
    Location:94 → 148
    LIM2_Lmx1a_Lmx1b; The second LIM domain of Lmx1a and Lmx1b
    pfam00046
    Location:198 → 252
    Homeobox; Homeobox domain

  2. XM_023247553.2 → XP_023103321.2  LIM homeobox transcription factor 1-alpha

    UniProtKB/TrEMBL
    A0A337SI88, M3WTY4
    Conserved Domains (3) summary
    cd09370
    Location:35 → 86
    LIM1_Lmx1a; The first LIM domain of Lmx1a
    cd09378
    Location:94 → 148
    LIM2_Lmx1a_Lmx1b; The second LIM domain of Lmx1a and Lmx1b
    pfam00046
    Location:198 → 252
    Homeobox; Homeobox domain
Nucleotide Protein
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