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LOC100889261 uncharacterized LOC100889261 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 100889261, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100889261
Gene description
uncharacterized LOC100889261
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145605.1 (5425278..5444567, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577707.1 (180543..199294)

NW_022145605.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing protein 5-like Neighboring gene uncharacterized LOC105441676 Neighboring gene small G protein signaling modulator 1 Neighboring gene clathrin heavy chain Neighboring gene uncharacterized LOC115926616 Neighboring gene somatomedin-B and thrombospondin type-1 domain-containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100889261
Names
Myc-type, basic helix-loop-helix (bHLH) domain-containing protein
max-binding protein MNT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145605.1 Reference Spur_5.0 Primary Assembly

    Range
    5425278..5444567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003728037.3 → XP_003728085.2  uncharacterized protein LOC100889261

    UniProtKB/TrEMBL
    A0A7M7GIC3
    Conserved Domains (1) summary
    cd11402
    Location:333 → 411
    bHLHzip_Mnt; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in Max-binding protein Mnt and similar proteins
Nucleotide Protein
Heading Accession and Version

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