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LOC100745008 CCR4-NOT transcription complex subunit 1 [ Bombus impatiens (common eastern bumble bee) ]

Gene ID: 100745008, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100745008
Gene description
CCR4-NOT transcription complex subunit 1
See related
EnsemblRapid:ENSBIMG00000005820
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus impatiens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
103 current BIMP_2.2 (GCF_000188095.3) Unplaced Scaffold NT_176616.1 (1484630..1494327)

NT_176616.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 102A Neighboring gene negative elongation factor B Neighboring gene putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 Neighboring gene pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial Neighboring gene uncharacterized LOC117151392

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_176616 Unplaced Scaffold Reference BIMP_2.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes involved in convergent evolution of eusociality in bees. Woodard SH, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21482769, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus impatiens Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIMP_2.2

Genomic

  1. NT_176616.1 Reference BIMP_2.2

    Range
    1484630..1494327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012382881.3 → XP_012238304.1  CCR4-NOT transcription complex subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3UP74
    Related
    ENSBIMP00000007509.1, ENSBIMT00000016543.1
    Conserved Domains (5) summary
    pfam04054
    Location:2023 → 2379
    Not1; CCR4-Not complex component, Not1
    pfam12842
    Location:1385 → 1530
    DUF3819; Domain of unknown function (DUF3819)
    pfam16415
    Location:1070 → 1296
    CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    pfam16417
    Location:812 → 1000
    CNOT1_TTP_bind; CCR4-NOT transcription complex subunit 1 TTP binding domain
    pfam16418
    Location:506 → 660
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  2. XM_012382882.3 → XP_012238305.1  CCR4-NOT transcription complex subunit 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P3UPX2
    Conserved Domains (5) summary
    pfam04054
    Location:2021 → 2377
    Not1; CCR4-Not complex component, Not1
    pfam12842
    Location:1385 → 1530
    DUF3819; Domain of unknown function (DUF3819)
    pfam16415
    Location:1070 → 1296
    CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    pfam16417
    Location:812 → 1000
    CNOT1_TTP_bind; CCR4-NOT transcription complex subunit 1 TTP binding domain
    pfam16418
    Location:506 → 660
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat
Nucleotide Protein
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