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elf2b E74-like factor 2b (ets domain transcription factor) [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100690655, updated on 8-Mar-2024

Summary

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Gene symbol
elf2b
Gene description
E74-like factor 2b (ets domain transcription factor)
See related
Ensembl:ENSONIG00000003360
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
elf2
Expression
Ubiquitous expression in testis (RPKM 18.0), brain (RPKM 13.0) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG6
Exon count:
12
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG6 NC_031971.2 (37296963..37318434)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG6 NC_031971.1 (5742392..5763857, complement)

Linkage Group LG6 - NC_031971.2Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-33B Neighboring gene mitochondria localized glutamic acid rich protein Neighboring gene nocturnin b Neighboring gene cingulin-like Neighboring gene uncharacterized LOC102078622

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ETS-related transcription factor Elf-2
Names
E74 like ETS transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031971.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    37296963..37318434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005470064.4 → XP_005470121.1  ETS-related transcription factor Elf-2 isoform X1

    See identical proteins and their annotated locations for XP_005470121.1

    UniProtKB/TrEMBL
    I3J5T9, I3J5U0
    Conserved Domains (2) summary
    smart00413
    Location:242 → 324
    ETS; erythroblast transformation specific domain
    pfam12310
    Location:4 → 137
    Elf-1_N; Transcription factor protein N terminal

  2. XM_005470066.4 → XP_005470123.1  ETS-related transcription factor Elf-2 isoform X2

    UniProtKB/TrEMBL
    I3J5U0
    Conserved Domains (2) summary
    pfam00178
    Location:244 → 323
    Ets; Ets-domain
    pfam12310
    Location:4 → 137
    Elf-1_N; Transcription factor protein N terminal

  3. XM_025908047.1 → XP_025763832.1  ETS-related transcription factor Elf-2 isoform X1

    UniProtKB/TrEMBL
    I3J5T9, I3J5U0
    Related
    ENSONIP00000004229.1, ENSONIT00000004230.2
    Conserved Domains (2) summary
    smart00413
    Location:242 → 324
    ETS; erythroblast transformation specific domain
    pfam12310
    Location:4 → 137
    Elf-1_N; Transcription factor protein N terminal

  4. XM_019359567.2 → XP_019215112.1  ETS-related transcription factor Elf-2 isoform X4

    UniProtKB/TrEMBL
    I3J5U0

  5. XM_005470067.4 → XP_005470124.1  ETS-related transcription factor Elf-2 isoform X3

    UniProtKB/TrEMBL
    I3J5U0
    Related
    ENSONIP00000004230.2, ENSONIT00000004231.2
    Conserved Domains (2) summary
    pfam00178
    Location:156 → 235
    Ets; Ets-domain
    pfam12310
    Location:20 → 48
    Elf-1_N; Transcription factor protein N terminal
Nucleotide Protein
Heading Accession and Version

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