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VAX1 ventral anterior homeobox 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100585769, updated on 8-Mar-2024

Summary

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Gene symbol
VAX1
Gene description
ventral anterior homeobox 1
See related
EnsemblRapid:ENSNLEG00000046292
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 3 NC_044383.1 (16429371..16439134)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 3 NC_019818.1 (16700341..16710113)

Chromosome 3 - NC_044383.1Genomic Context describing neighboring genes Neighboring gene potassium two pore domain channel subfamily K member 18 Neighboring gene uncharacterized LOC105739503 Neighboring gene dnaJ homolog subfamily B member 6-like Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ventral anterior homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044383.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    16429371..16439134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003255004.2 → XP_003255052.1  ventral anterior homeobox 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3H569
    Related
    ENSNLEP00000054239.1, ENSNLET00000067513.1
    Conserved Domains (1) summary
    pfam00046
    Location:103 → 143
    Homeobox; Homeobox domain

  2. XM_003255005.3 → XP_003255053.1  ventral anterior homeobox 1 isoform X1

    See identical proteins and their annotated locations for XP_003255053.1

    UniProtKB/TrEMBL
    G1S3J8
    Related
    ENSNLEP00000054920.1, ENSNLET00000078719.1
    Conserved Domains (2) summary
    COG5576
    Location:66 → 184
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:103 → 157
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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