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POMT1 protein O-mannosyltransferase 1 [ Sus scrofa (pig) ]

Gene ID: 100525803, updated on 8-Mar-2024

Summary

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Official Symbol
POMT1provided by VGNC
Official Full Name
protein O-mannosyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:103155
See related
Ensembl:ENSSSCG00000005716
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 11.1), ovary (RPKM 9.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (271432196..271448584)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (305440591..305456740)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256425 Neighboring gene phospholipid phosphatase 7 (inactive) Neighboring gene 60S ribosomal protein L5 pseudogene Neighboring gene proline rich coiled-coil 2B Neighboring gene uridine-cytidine kinase 1 Neighboring gene proline rich transmembrane protein 1B Neighboring gene Rap guanine nucleotide exchange factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    271432196..271448584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021070519.1 → XP_020926178.1  protein O-mannosyl-transferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1T8K3, A0A8D0PFV6, A0A8D1LH02
    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  2. XM_003122249.4 → XP_003122297.1  protein O-mannosyl-transferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1T8K3, A0A8D0PFV6, A0A8D1LH02
    Related
    ENSSSCP00000006124.4, ENSSSCT00000006286.5
    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  3. XM_005654585.3 → XP_005654642.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005654642.1

    UniProtKB/TrEMBL
    A0A4X1T8K3, A0A8D0PFV6
    Conserved Domains (4) summary
    smart00472
    Location:299 → 356
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:14 → 751
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:20 → 266
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:520 → 749
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

  4. XM_021070509.1 → XP_020926168.1  protein O-mannosyl-transferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1T8K3, A0A8D0PFV6, A0A8D1LH02
    Related
    ENSSSCP00000056986.2, ENSSSCT00000043029.3
    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  5. XM_013986968.1 → XP_013842422.1  protein O-mannosyl-transferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1T8K3, A0A8D0PFV6
    Conserved Domains (4) summary
    smart00472
    Location:299 → 356
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:14 → 751
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:20 → 266
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:520 → 749
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

  6. XM_005654584.2 → XP_005654641.1  protein O-mannosyl-transferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1T8K3, A0A8D0PFV6, A0A8W4FNZ1
    Related
    ENSSSCP00000080637.1, ENSSSCT00000099245.1
    Conserved Domains (4) summary
    smart00472
    Location:299 → 356
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    pfam02366
    Location:20 → 266
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam02815
    Location:310 → 472
    MIR; MIR domain
    pfam16192
    Location:520 → 609
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

  7. XM_005654583.3 → XP_005654640.1  protein O-mannosyl-transferase 1 isoform X1

    See identical proteins and their annotated locations for XP_005654640.1

    UniProtKB/TrEMBL
    A0A4X1T8K3, A0A8D0PFV6
    Conserved Domains (4) summary
    smart00472
    Location:299 → 356
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:14 → 751
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:20 → 266
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:520 → 749
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

  8. XM_013986981.2 → XP_013842435.1  protein O-mannosyl-transferase 1 isoform X4

    UniProtKB/TrEMBL
    A0A4X1T8K3, A0A8D0PFV6
    Related
    ENSSSCP00000079781.1, ENSSSCT00000106138.1
    Conserved Domains (4) summary
    smart00472
    Location:245 → 302
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:2 → 697
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:1 → 212
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:466 → 695
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
Nucleotide Protein
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