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TFEC transcription factor EC [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100406731, updated on 3-Apr-2024

Summary

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Gene symbol
TFEC
Gene description
transcription factor EC
See related
Ensembl:ENSCJAG00000005199
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 8 NC_071449.1 (83824790..83909304, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 8 NC_048390.1 (84596015..84801941, complement)

Chromosome 8 - NC_071449.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128928495 Neighboring gene uncharacterized LOC118143867 Neighboring gene testin LIM domain protein Neighboring gene caveolin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor EC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071449.1 Reference mCalJa1.2.pat.X

    Range
    83824790..83909304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002751763.6 → XP_002751809.1  transcription factor EC isoform X1

    See identical proteins and their annotated locations for XP_002751809.1

    UniProtKB/TrEMBL
    A0A2R8MPG5, A0A2R8N2I1
    Related
    ENSCJAP00000009505.2
    Conserved Domains (2) summary
    cd00083
    Location:136 → 196
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam11851
    Location:224 → 331
    DUF3371; Domain of unknown function (DUF3371)

  2. XM_054237469.1 → XP_054093444.1  transcription factor EC isoform X1

    UniProtKB/TrEMBL
    A0A2R8MPG5

  3. XM_009002735.4 → XP_009000983.1  transcription factor EC isoform X2

    UniProtKB/TrEMBL
    A0A2R8MDP8, A0A2R8N2I1
    Conserved Domains (2) summary
    cd00083
    Location:70 → 130
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam11851
    Location:158 → 265
    DUF3371; Domain of unknown function (DUF3371)
Nucleotide Protein
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