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LHX1 LIM homeobox 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100392549, updated on 8-Mar-2024

Summary

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Gene symbol
LHX1
Gene description
LIM homeobox 1
See related
Ensembl:ENSCJAG00000015458
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (93260795..93269087)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (96009788..96017694)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118153791 Neighboring gene mitochondrial rRNA methyltransferase 1 Neighboring gene uncharacterized LOC128932126 Neighboring gene uncharacterized LOC103793155 Neighboring gene apoptosis antagonizing transcription factor Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene mitogen-activated protein kinase 6-like Neighboring gene chromosome 5 C17orf78 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM/homeobox protein Lhx1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    93260795..93269087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002748287.7 → XP_002748333.1  LIM/homeobox protein Lhx1

    See identical proteins and their annotated locations for XP_002748333.1

    UniProtKB/TrEMBL
    F6UGX4
    Related
    ENSCJAP00000028486.1
    Conserved Domains (4) summary
    cd09367
    Location:4 → 55
    LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
    cd09375
    Location:63 → 118
    LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
    pfam00046
    Location:183 → 236
    Homeobox; Homeobox domain
    cl28271
    Location:263 → 382
    dnaA; chromosomal replication initiation protein; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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