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SOX18 SRY-box transcription factor 18 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100224917, updated on 8-Mar-2024

Summary

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Gene symbol
SOX18
Gene description
SRY-box transcription factor 18
See related
Ensembl:ENSTGUG00000007265
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
2
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 20 NC_044232.2 (8346225..8350189, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 20 NC_045018.1 (8599364..8603384, complement)

Chromosome 20 - NC_044232.2Genomic Context describing neighboring genes Neighboring gene chromosome 20 C20orf204 homolog Neighboring gene ammonium transporter Rh type A-like Neighboring gene uncharacterized LOC115497933 Neighboring gene transcription elongation factor A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lymphangiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-18
Names
SRY-box 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044232.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    8346225..8350189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002197953.6 → XP_002197989.1  transcription factor SOX-18

    UniProtKB/TrEMBL
    H0ZA76
    Related
    ENSTGUP00000007479.1
    Conserved Domains (2) summary
    cd01388
    Location:99 → 170
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12067
    Location:221 → 268
    Sox17_18_mid; Sox 17/18 central domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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