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LOC100201806 retinal homeobox protein Rax-like [ Hydra vulgaris (swiftwater hydra) ]

Gene ID: 100201806, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100201806
Gene description
retinal homeobox protein Rax-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Hydra vulgaris
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
Also known as
Alx
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Hydra_105_v3 (GCF_022113875.1) 15 NC_061170.1 (8434667..8435885, complement)
102 previous assembly Hydra_RP_1.0 (GCF_000004095.1) Unplaced Scaffold NW_004168655.1 (107408..108628)

Chromosome 15 - NC_061170.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124807178 Neighboring gene uncharacterized LOC105850362 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene uncharacterized LOC101237974 Neighboring gene uncharacterized LOC124806879

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. HyAlx, an aristaless-related gene, is involved in tentacle formation in hydra. Smith KM, et al. Development, 2000 Nov. PMID 11044390

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinal homeobox protein Rax-like
Names
aristaless-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001309729.1 → NP_001296658.1  retinal homeobox protein Rax-like

    See identical proteins and their annotated locations for NP_001296658.1

    Status: PROVISIONAL

    Source sequence(s)
    AF295531
    UniProtKB/TrEMBL
    A0A8B7DIW5, Q9GYV2
    Conserved Domains (1) summary
    pfam00046
    Location:75 → 127
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Hydra vulgaris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hydra_105_v3 Primary Assembly

Genomic

  1. NC_061170.1 Reference Hydra_105_v3 Primary Assembly

    Range
    8434667..8435885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases