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LOC100160367 longitudinals lacking protein [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100160367, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100160367
Gene description
longitudinals lacking protein
See related
APHIDBASE:ACYPI001667; EnsemblRapid:LOC100160367
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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Genomic context

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See LOC100160367 in Genome Data Viewer
Location:
chromosome: A2
Exon count:
8
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A2 NC_042495.1 (101929230..101956241, complement)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383922.1 (8700..36094)

Chromosome A2 - NC_042495.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 7 Neighboring gene NADH dehydrogenase ubiquinone Neighboring gene zinc finger protein 586-like Neighboring gene uncharacterized LOC107884675

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
longitudinals lacking protein, isoforms A/B/D/L; longitudinals lacking protein, isoforms F/I/K/T; longitudinals lacking protein, isoforms N/O/W/X/Y

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042495.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    101929230..101956241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016805597.2 → XP_016661086.1  longitudinals lacking protein, isoforms F/I/K/T isoform X9

    UniProtKB/TrEMBL
    A0A8R2H5G6
    Related
    XP_016661086.1, XM_016805597.2
    Conserved Domains (2) summary
    sd00020
    Location:341 → 368
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  2. XM_016805594.2 → XP_016661083.1  longitudinals lacking protein, isoforms F/I/K/T isoform X4

    UniProtKB/TrEMBL
    A0A8R2D5I6
    Related
    XP_016661083.1, XM_016805594.2
    Conserved Domains (2) summary
    sd00017
    Location:344 → 364
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  3. XM_008186285.3 → XP_008184507.1  longitudinals lacking protein, isoforms F/I/K/T isoform X3

    UniProtKB/TrEMBL
    A0A8R2B6R9
    Related
    XP_008184507.1, XM_008186285.3
    Conserved Domains (2) summary
    sd00017
    Location:345 → 365
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  4. XM_029489261.1 → XP_029345121.1  longitudinals lacking protein, isoforms N/O/W/X/Y isoform X6

    UniProtKB/TrEMBL
    A0A8R2NS05
    Related
    XP_029345121.1, XM_029489261.1

  5. XM_008186286.3 → XP_008184508.1  longitudinals lacking protein, isoforms N/O/W/X/Y isoform X5

    UniProtKB/TrEMBL
    A0A8R2F9A9
    Related
    XP_008184508.1, XM_008186286.3
    Conserved Domains (2) summary
    sd00019
    Location:355 → 375
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  6. XM_008186283.3 → XP_008184505.1  longitudinals lacking protein, isoforms A/B/D/L isoform X2

    UniProtKB/TrEMBL
    A0A8R2B6W2
    Related
    XP_008184505.1, XM_008186283.3
    Conserved Domains (2) summary
    sd00017
    Location:410 → 430
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  7. XM_001947407.5 → XP_001947442.2  longitudinals lacking protein, isoforms A/B/D/L isoform X1

    UniProtKB/TrEMBL
    A0A8R2A327
    Related
    XP_001947442.2, XM_001947407.5
    Conserved Domains (2) summary
    sd00017
    Location:411 → 431
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  8. XM_016805596.2 → XP_016661085.1  longitudinals lacking protein, isoforms A/B/D/L isoform X8

    UniProtKB/TrEMBL
    A0A8R2D4J8
    Related
    XP_016661085.1, XM_016805596.2
    Conserved Domains (3) summary
    pfam15269
    Location:359 → 385
    zf-C2H2_7; Zinc-finger
    sd00017
    Location:337 → 357
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  9. XM_016805595.2 → XP_016661084.1  longitudinals lacking protein, isoforms A/B/D/L isoform X7

    UniProtKB/TrEMBL
    A0A8R2D4K3
    Related
    XP_016661084.1, XM_016805595.2
    Conserved Domains (3) summary
    pfam15269
    Location:360 → 386
    zf-C2H2_7; Zinc-finger
    sd00017
    Location:338 → 358
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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