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    LOC100267745 thioredoxin-like 4, chloroplastic [ Vitis vinifera (wine grape) ]

    Gene ID: 100267745, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC100267745
    Gene description
    thioredoxin-like 4, chloroplastic
    Locus tag
    VIT_00009494001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100267745 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (8819438..8822809, complement)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (8851227..8854561, complement)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100262583 Neighboring gene abscisic acid 8'-hydroxylase CYP707A1 Neighboring gene sterol carrier protein 2 Neighboring gene pentatricopeptide repeat-containing protein At2g04860

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin-like 4, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      8819438..8822809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002284707.5 → XP_002284743.1  thioredoxin-like 4, chloroplastic isoform X1

      See identical proteins and their annotated locations for XP_002284743.1

      UniProtKB/TrEMBL
      A0A438DYS7, E0CPV6
      Conserved Domains (1) summary
      cd02947
      Location:109 → 205
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...

    2. XM_019216696.2 → XP_019072241.1  thioredoxin-like 4, chloroplastic isoform X3

      UniProtKB/TrEMBL
      A0A438DYS7

    3. XM_010666269.3 → XP_010664571.1  thioredoxin-like 4, chloroplastic isoform X1

      See identical proteins and their annotated locations for XP_010664571.1

      UniProtKB/TrEMBL
      A0A438DYS7, E0CPV6
      Conserved Domains (1) summary
      cd02947
      Location:109 → 205
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...

    4. XM_059734372.1 → XP_059590355.1  thioredoxin-like 4, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A438DYS7, E0CPV6

    5. XM_019216694.1 → XP_019072239.1  thioredoxin-like 4, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A438DYS7
    Nucleotide Protein
    Heading Accession and Version

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