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    LOC100267671 protein FAR1-RELATED SEQUENCE 3 [ Vitis vinifera (wine grape) ]

    Gene ID: 100267671, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC100267671
    Gene description
    protein FAR1-RELATED SEQUENCE 3
    Locus tag
    VIT_00027346001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100267671 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (17124142..17161509, complement)
    102 previous assembly 12X (GCF_000003745.3) 13 NC_012019.3 (16118135..16156120, complement)

    Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene serrate RNA effector molecule Neighboring gene uncharacterized LOC100255674 Neighboring gene ethylene-responsive transcription factor WRI1 Neighboring gene uncharacterized LOC100255666

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAR1-RELATED SEQUENCE 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

      Range
      17124142..17161509 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002272879.5 → XP_002272915.3  protein FAR1-RELATED SEQUENCE 3

      See identical proteins and their annotated locations for XP_002272915.3

      UniProtKB/TrEMBL
      F6HIV9
      Conserved Domains (4) summary
      PLN03097
      Location:45 → 654
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:548 → 584
      SWIM; SWIM zinc finger
      pfam03101
      Location:66 → 138
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:275 → 363
      MULE; MULE transposase domain

    2. XM_010660709.3 → XP_010659011.1  protein FAR1-RELATED SEQUENCE 3

      See identical proteins and their annotated locations for XP_010659011.1

      UniProtKB/TrEMBL
      F6HIV9
      Conserved Domains (4) summary
      PLN03097
      Location:45 → 654
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:548 → 584
      SWIM; SWIM zinc finger
      pfam03101
      Location:66 → 138
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:275 → 363
      MULE; MULE transposase domain

    3. XM_059741624.1 → XP_059597607.1  protein FAR1-RELATED SEQUENCE 3

    RNA

    1. XR_002031567.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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