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    TMN6 Endomembrane protein 70 protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841956, updated on 15-Oct-2023

    Summary

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    Gene symbol
    TMN6
    Gene description
    Endomembrane protein 70 protein family
    Primary source
    Araport:AT1G55130
    Locus tag
    AT1G55130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTMN6; T7N22.7; T7N22_7; transmembrane nine 6
    Summary
    Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (20569573..20572489)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene indeterminate(ID)-domain 7 Neighboring gene beta-fructofuranosidase 5 Neighboring gene Ribonuclease III family protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene WAS/WASL-interacting family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104386.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi trans cisterna HDA PubMed 
    located_in endosome HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    Endomembrane protein 70 protein family
    NP_175909.1
    • transmembrane nine 6 (TMN6); CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: transmembrane nine 7 (TAIR:AT3G13772.1); Has 1575 Blast hits to 1549 proteins in 322 species: Archae - 0; Bacteria - 3; Metazoa - 617; Fungi - 232; Plants - 458; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20569573..20572489
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104386.3 → NP_175909.1  Endomembrane protein 70 protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175909.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WT7, Q9C720
      UniProtKB/TrEMBL
      A0A178W0I2, A0A5S9WM00, A0A654FH03
      Conserved Domains (1) summary
      pfam02990
      Location:55 → 594
      EMP70; Endomembrane protein 70
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C720.1

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