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    AT1G34350 Tmem18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840336, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT1G34350
    Gene description
    Tmem18
    Primary source
    Araport:AT1G34350
    Locus tag
    AT1G34350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7P12.4; F7P12_4
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    Genomic context

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    See AT1G34350 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (12534426..12536162)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene forkhead-associated (FHA) domain-containing protein Neighboring gene translation initiation factor 3 (IF-3) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtTMEM18 plays important roles in pollen tube and vegetative growth in Arabidopsis. Dou XY, et al. J Integr Plant Biol, 2016 Jul. PMID 26699939, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TMEM18 is important for plant growth in Arabidopsis.
      Title: AtTMEM18 plays important roles in pollen tube and vegetative growth in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_103157.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within callose deposition in cell wall IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cell morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    colocalizes_with nuclear outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Tmem18
    NP_001185136.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.
    NP_564444.1
    • unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12534426..12536162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198207.1 → NP_001185136.1  Tmem18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185136.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EGV4, F4HUY1, Q8LCP2
      Conserved Domains (1) summary
      pfam14770
      Location:37 → 181
      TMEM18; Transmembrane protein 18

    2. NM_103157.4 → NP_564444.1  Tmem18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564444.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WLP5, A0A654EGV4, Q67Y14, Q8LCP2
      Conserved Domains (1) summary
      pfam14770
      Location:39 → 156
      TMEM18; Transmembrane protein 18
    Nucleotide Protein
    Heading Accession and Version

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