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    AT1G17780 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838356, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT1G17780
    Gene description
    uncharacterized protein
    Primary source
    Araport:AT1G17780
    Locus tag
    AT1G17780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2H15.22; F2H15_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (6123567..6125339)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PEP1 receptor 2 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like protein Neighboring gene DNA-binding bromodomain-containing protein Neighboring gene early nodulin-like protein 22 Neighboring gene beta-tonoplast intrinsic protein Neighboring gene ncRNA Neighboring gene testis-expressed sequence 2-like protein (DUF2404)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dicot-specific ATG8-interacting ATI3 proteins interact with conserved UBAC2 proteins and play critical roles in plant stress responses. Zhou J, et al. Autophagy, 2018. PMID 29313416, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332320.1
    NM_001332321.1
    NM_001332322.1
    NM_001332323.1
    NM_101641.2
    NM_202123.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within heat acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in phagophore IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_173220.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973852.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6123567..6125339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202123.3 → NP_973852.1  uncharacterized protein AT1G17780 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973852.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W476, A0A654EBJ5, F4I924

    2. NM_001332320.1 → NP_001323034.1  uncharacterized protein AT1G17780 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W476, A0A654EBJ5, F4I924

    3. NM_001332321.1 → NP_001323037.1  uncharacterized protein AT1G17780 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W476, A0A1P8AVT6

    4. NM_001332322.1 → NP_001323036.1  uncharacterized protein AT1G17780 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W476, A0A1P8AVT6

    5. NM_001332323.1 → NP_001323035.1  uncharacterized protein AT1G17780 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W476, A0A654EBJ5, F4I924

    6. NM_101641.2 → NP_173220.2  uncharacterized protein AT1G17780 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173220.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8L6Z0
    Nucleotide Protein
    Heading Accession and Version

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