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    ATCHX5 Cation/hydrogen exchanger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837336, updated on 7-Sep-2023

    Summary

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    Gene symbol
    ATCHX5
    Gene description
    Cation/hydrogen exchanger family protein
    Primary source
    Araport:AT1G08150
    Locus tag
    AT1G08150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CATION/H+ EXCHANGER 5; CHX5; T6D22.24
    Summary
    member of Putative Na+/H+ antiporter family
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (2556191..2559228, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cation/H+ exchanger 6B Neighboring gene cation/H+ exchanger 6A Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic relationships within cation transporter families of Arabidopsis. Mäser P, et al. Plant Physiol, 2001 Aug. PMID 11500563, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sodium:proton antiporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic cation transport IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cation/hydrogen exchanger family protein
    NP_172294.2
    • ATCHX5; FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 6A (TAIR:AT1G08140.1); Has 2700 Blast hits to 2678 proteins in 819 species: Archae - 128; Bacteria - 1881; Metazoa - 0; Fungi - 113; Plants - 529; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2556191..2559228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100690.3 → NP_172294.2  Cation/hydrogen exchanger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172294.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EDG3, Q9LMZ3, Q9SGE4
      UniProtKB/TrEMBL
      A0A178WBP4, A0A5S9T8T3
      Conserved Domains (2) summary
      PLN03159
      Location:39 → 797
      PLN03159; cation/H(+) antiporter 15; Provisional
      COG0475
      Location:68 → 475
      KefB; Kef-type K+ transport system, membrane component KefB [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3EDG3.1

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