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    MYB59 myb domain protein 59 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836099, updated on 26-Oct-2023

    Summary

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    Gene symbol
    MYB59
    Gene description
    myb domain protein 59
    Primary source
    Araport:AT5G59780
    Locus tag
    AT5G59780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATMYB59; ATMYB59-1; ATMYB59-2; ATMYB59-3; MTH12.19; MTH12_19; myb domain protein 59; MYB DOMAIN PROTEIN 59
    Summary
    Encodes a putative transcription factor (MYB59).
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (24081868..24083562, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene monofunctional riboflavin biosynthesis protein RIBA 3 Neighboring gene hypothetical protein (DUF1635) Neighboring gene Protein-tyrosine phosphatase-like, PTPLA Neighboring gene ncRNA Neighboring gene UPSTREAM OF FLC protein (DUF966)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana Myb59 Gene Is Involved in the Response to Heterodera schachtii Infestation, and Its Overexpression Disturbs Regular Development of Nematode-Induced Syncytia. Wiśniewska A, et al. Int J Mol Sci, 2021 Jun 16. PMID 34208611, Free PMC Article
    2. MYB59 transcription factor behaves differently in metallicolous and non-metallicolous populations of Arabidopsis halleri. Fasani E, et al. Funct Plant Biol, 2021 Aug. PMID 33972014
    3. A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. Li J, et al. J Exp Bot, 2006. PMID 16531467
    4. The Transcription Factor MYB59 Regulates K(+)/NO(3) (-) Translocation in the Arabidopsis Response to Low K(+) Stress. Du XQ, et al. Plant Cell, 2019 Mar. PMID 30760559, Free PMC Article
    5. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Role of Potassium-Dependent Alternative Splicing of MYB59 in the Maintenance of Potassium Concentration in Shoots of Arabidopsis thaliana.
      Title: Role of Potassium-Dependent Alternative Splicing of MYB59 in the Maintenance of Potassium Concentration in Shoots of Arabidopsis thaliana.
    2. Arabidopsis thaliana Myb59 is involved in the response to Heterodera schachtii infestation, and its overexpression disturbs development of nematode-induced syncytia
      Title: Arabidopsis thaliana Myb59 Gene Is Involved in the Response to Heterodera schachtii Infestation, and Its Overexpression Disturbs Regular Development of Nematode-Induced Syncytia.
    3. MYB59 transcription factor behaves differently in metallicolous and non-metallicolous populations of Arabidopsis halleri.
      Title: MYB59 transcription factor behaves differently in metallicolous and non-metallicolous populations of Arabidopsis halleri.
    4. These data demonstrate that MYB59 responds to low K(+) (LK) stress and directs root-to-shoot K(+)/NO3 (-) transport by regulating the expression of NPF7.3 in Arabidopsis roots.
      Title: The Transcription Factor MYB59 Regulates K(+)/NO(3) (-) Translocation in the Arabidopsis Response to Low K(+) Stress.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_125370.4
    NM_180894.4
    NM_180895.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to potassium ion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of potassium ion transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 59
    NP_200786.1
    • myb domain protein 59 (MYB59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, regulation of transcription, DNA-dependent, response to chitin, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_851225.1
    • myb domain protein 59 (MYB59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.3); Has 5767 Blast hits to 5764 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 94; Plants - 4827; Viruses - 3; Other Eukaryotes - 535 (source: NCBI BLink).
    NP_851226.1
    • myb domain protein 59 (MYB59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, regulation of transcription, DNA-dependent, response to chitin, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.4); Has 7980 Blast hits to 7505 proteins in 427 species: Archae - 0; Bacteria - 0; Metazoa - 549; Fungi - 241; Plants - 5665; Viruses - 3; Other Eukaryotes - 1522 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24081868..24083562 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180895.3 → NP_851226.1  myb domain protein 59 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851226.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8K4
      Conserved Domains (2) summary
      smart00717
      Location:42 → 89
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:42 → 87
      Myb_DNA-binding; Myb-like DNA-binding domain

    2. NM_180894.4 → NP_851225.1  myb domain protein 59 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851225.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U9L3
      Conserved Domains (2) summary
      smart00717
      Location:1 → 45
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:2 → 43
      Myb_DNA-binding; Myb-like DNA-binding domain

    3. NM_125370.4 → NP_200786.1  myb domain protein 59 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200786.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O50069, Q0WPL8, Q4JL84, Q4JL85, Q4JL86, Q7DLH5, Q9FN86
      UniProtKB/TrEMBL
      A0A5S9YFR2, A0A654GCP6, A0A7G2FIE8
      Conserved Domains (1) summary
      PLN03091
      Location:5 → 115
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4JL84.2

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