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    NAC082 NAC domain containing protein 82 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830792, updated on 15-Feb-2024

    Summary

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    Gene symbol
    NAC082
    Gene description
    NAC domain containing protein 82
    Primary source
    Araport:AT5G09330
    Locus tag
    AT5G09330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    anac082; ANAC082; NAC domain containing protein 82; T5E8.130; T5E8_130; VND-interacting 1; VNI1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (2892338..2895480, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene vacuolar sorting protein 9 domain protein Neighboring gene vacuolar protein sorting-associated 9A-like protein Neighboring gene Ubiquitin family protein Neighboring gene tRNA-Leu

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors. Jaspers P, et al. Plant J, 2009 Oct. PMID 19548978
    2. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article
    3. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Miscellaneous features

    • Loc: c2895043-2894930 AT5G09330.uORF1
    NM_001085082.1
    NM_001085083.1
    NM_001161228.2
    NM_001343045.1
    NM_120969.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NAC domain containing protein 82
    NP_001078551.1
    • NAC domain containing protein 82 (NAC082); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 103 (TAIR:AT5G64060.1); Has 3286 Blast hits to 2997 proteins in 111 species: Archae - 0; Bacteria - 34; Metazoa - 211; Fungi - 2; Plants - 2912; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
    NP_001078552.1
    • NAC domain containing protein 82 (NAC082); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 103 (TAIR:AT5G64060.1); Has 3286 Blast hits to 2997 proteins in 111 species: Archae - 0; Bacteria - 34; Metazoa - 211; Fungi - 2; Plants - 2912; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
    NP_001154700.1
    • VND-interacting 1 (VNI1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 103 (TAIR:AT5G64060.1); Has 3286 Blast hits to 2997 proteins in 111 species: Archae - 0; Bacteria - 34; Metazoa - 211; Fungi - 2; Plants - 2912; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
    NP_196495.1
    • NAC domain containing protein 82 (NAC082); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 103 (TAIR:AT5G64060.1); Has 3286 Blast hits to 2997 proteins in 111 species: Archae - 0; Bacteria - 34; Metazoa - 211; Fungi - 2; Plants - 2912; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2892338..2895480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120969.4 → NP_196495.1  NAC domain containing protein 82 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196495.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY82
      UniProtKB/TrEMBL
      A0A178ULC6, A0A654FZK2
      Conserved Domains (1) summary
      pfam02365
      Location:9 → 48
      NAM; No apical meristem (NAM) protein

    2. NM_001343045.1 → NP_001330102.1  NAC domain containing protein 82 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY82
      UniProtKB/TrEMBL
      A0A178ULC6, A0A654FZK2

    3. NM_001161228.2 → NP_001154700.1  NAC domain containing protein 82 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154700.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY82
      UniProtKB/TrEMBL
      A0A178ULC6, A0A654FZK2
      Conserved Domains (1) summary
      pfam02365
      Location:9 → 48
      NAM; No apical meristem (NAM) protein

    4. NM_001085083.1 → NP_001078552.1  NAC domain containing protein 82 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078552.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY82
      UniProtKB/TrEMBL
      A0A178ULC6, A0A654FZK2
      Conserved Domains (1) summary
      pfam02365
      Location:9 → 48
      NAM; No apical meristem (NAM) protein

    5. NM_001085082.1 → NP_001078551.1  NAC domain containing protein 82 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078551.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FY82
      UniProtKB/TrEMBL
      A0A178ULC6, A0A654FZK2
      Conserved Domains (1) summary
      pfam02365
      Location:9 → 48
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FY82.1

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