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    LOC4349089 probable methyltransferase PMT18 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349089, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4349089
    Gene description
    probable methyltransferase PMT18
    Locus tag
    OSNPB_100510400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 259.8), flowers (RPKM 57.9) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19620011..19626181)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276435 Neighboring gene protein ROOT PRIMORDIUM DEFECTIVE 1 Neighboring gene auxin-responsive protein SAUR32 Neighboring gene CDPK-related kinase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable methyltransferase PMT18
    Names
    Os10g0510400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      19620011..19626181
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758883.1 → XP_015614369.1  probable methyltransferase PMT18

      UniProtKB/TrEMBL
      A0A0P0XWN0, B8BHU3, Q0IWG5, Q7XCY7, Q94GX1
      Conserved Domains (1) summary
      pfam03141
      Location:113 → 623
      Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

    2. XM_015758881.1 → XP_015614367.1  probable methyltransferase PMT18

      UniProtKB/TrEMBL
      A0A0P0XWN0, B8BHU3, Q0IWG5, Q7XCY7, Q94GX1
      Conserved Domains (1) summary
      pfam03141
      Location:113 → 623
      Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

    3. XM_015758882.2 → XP_015614368.1  probable methyltransferase PMT18

      UniProtKB/TrEMBL
      A0A0P0XWN0, B8BHU3, Q0IWG5, Q7XCY7, Q94GX1
      Conserved Domains (1) summary
      pfam03141
      Location:113 → 623
      Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

    4. XM_015758884.2 → XP_015614370.1  probable methyltransferase PMT18

      UniProtKB/TrEMBL
      A0A0P0XWN0, B8BHU3, Q0IWG5, Q7XCY7, Q94GX1
      Conserved Domains (1) summary
      pfam03141
      Location:113 → 623
      Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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