U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC4331478 NAC domain-containing protein 37 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331478, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4331478
    Gene description
    NAC domain-containing protein 37
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1528953..1537771, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 9 Neighboring gene uncharacterized LOC4331476 Neighboring gene transcription factor RF2b-like Neighboring gene myosin-11

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    NAC domain-containing protein 37
    Names
    secondary wall NAC transcription factor 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1528953..1537771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024291.1 → XP_025880076.1  NAC domain-containing protein 37

      UniProtKB/TrEMBL
      A2XC01, G3M8D5, Q8S5V6
      Conserved Domains (1) summary
      pfam02365
      Location:9 → 136
      NAM; No apical meristem (NAM) protein

    2. XM_015775228.2 → XP_015630714.1  NAC domain-containing protein 37

      UniProtKB/TrEMBL
      A2XC01, G3M8D5, Q8S5V6
      Conserved Domains (1) summary
      pfam02365
      Location:9 → 136
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases