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    LOC100243827 squamosa promoter-binding-like protein 16 [ Vitis vinifera (wine grape) ]

    Gene ID: 100243827, updated on 20-Nov-2023

    Summary

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    Gene symbol
    LOC100243827
    Gene description
    squamosa promoter-binding-like protein 16
    Locus tag
    VIT_00010522001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (26142317..26147464, complement)
    102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (21412823..21417954, complement)

    Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104880621 Neighboring gene flowering locus C Neighboring gene AP2/ERF and B3 domain-containing transcription factor At1g51120 Neighboring gene MADS-box protein 4 Neighboring gene uncharacterized LOC100248973 Neighboring gene probable WRKY transcription factor 75

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco R, et al. PLoS One, 2007 Dec 19. PMID 18094749, Free PMC Article
    2. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

      Range
      26142317..26147464 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019222271.2 → XP_019077816.1  squamosa promoter-binding-like protein 16

      UniProtKB/TrEMBL
      A0A438IRP2, A5BHV4

    2. XM_010657827.3 → XP_010656129.1  squamosa promoter-binding-like protein 16

      See identical proteins and their annotated locations for XP_010656129.1

      UniProtKB/TrEMBL
      A0A438IRP2, A5BHV4
      Conserved Domains (1) summary
      pfam03110
      Location:91 → 165
      SBP; SBP domain

    3. XM_059735718.1 → XP_059591701.1  squamosa promoter-binding-like protein 16

      UniProtKB/TrEMBL
      A0A438IRP2, A5BHV4

    4. XM_059735720.1 → XP_059591703.1  squamosa promoter-binding-like protein 16

      UniProtKB/TrEMBL
      A0A438IRP2, A5BHV4
    Nucleotide Protein
    Heading Accession and Version

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