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    LOC100129697 uncharacterized LOC100129697 [ Homo sapiens (human) ]

    Gene ID: 100129697, updated on 8-Mar-2024

    Summary

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    Gene symbol
    LOC100129697
    Gene description
    uncharacterized LOC100129697
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in fat (RPKM 1.6), heart (RPKM 0.7) and 19 other tissues See more
    Orthologs
    all
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    Genomic context

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    Location:
    16q24.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (88939271..88953782)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (95016690..95031162)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (89005679..89020190)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 3 Neighboring gene uncharacterized LOC102724632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7884 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:88979538-88979753 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11375 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88989393-88990300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88990301-88991209 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88991210-88992117 Neighboring gene cadmium/zinc-transporting ATPase HMA2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:88993027-88993933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11376 Neighboring gene uncharacterized LOC107984871 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11377 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7885 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7886 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7887 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7889 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:89023211-89023356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11378 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11379 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89035421-89036276 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11380 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11382 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89041740-89042284 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11384 Neighboring gene uncharacterized LOC124903756 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:89048580-89048782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89049867-89050367 Neighboring gene VISTA enhancer hs1854 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89067412-89067972 Neighboring gene GATA motif-containing MPRA enhancer 137 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11386 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11387 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11388 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7891 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11389 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11390 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89100847-89101733 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89103856-89104363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11391 Neighboring gene uncharacterized LOC105371411

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_168285.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092384

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      88939271..88953782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      95016690..95031162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001290330.2: Suppressed sequence

      Description
      NM_001290330.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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