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    SHOX2 short stature homeobox 2 [ Bos taurus (cattle) ]

    Gene ID: 525900, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SHOX2provided by VGNC
    Official Full Name
    short stature homeobox 2provided by VGNC
    Primary source
    VGNC:VGNC:34606
    See related
    BGD:BT14115; Ensembl:ENSBTAG00000005230
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (109415817..109428087)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene arginine and serine rich coiled-coil 1 Neighboring gene putative ribosomal protein eL39-like 5 Neighboring gene uncharacterized LOC132345777 Neighboring gene THAP domain-containing protein 7-like Neighboring gene ventricular zone expressed PH domain containing 1 Neighboring gene pentraxin 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short stature homeobox protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205527.1 → NP_001192456.1  short stature homeobox protein 2

      See identical proteins and their annotated locations for NP_001192456.1

      Status: VALIDATED

      Source sequence(s)
      EE368702, NKLS02000001
      UniProtKB/TrEMBL
      E1BLB9
      Related
      ENSBTAP00000042202.4, ENSBTAT00000044731.4
      Conserved Domains (2) summary
      pfam00046
      Location:170 → 223
      Homeobox; Homeobox domain
      pfam03826
      Location:338 → 353
      OAR; OAR domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      109415817..109428087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005201725.5 → XP_005201782.2  short stature homeobox protein 2 isoform X1

      UniProtKB/TrEMBL
      E1BLB9
      Conserved Domains (2) summary
      pfam00046
      Location:138 → 191
      Homeobox; Homeobox domain
      pfam03826
      Location:306 → 322
      OAR; OAR domain

    2. XM_005201726.5 → XP_005201783.2  short stature homeobox protein 2 isoform X2

      UniProtKB/TrEMBL
      E1BLB9
      Related
      ENSBTAP00000076462.1, ENSBTAT00000113556.1
      Conserved Domains (2) summary
      pfam00046
      Location:138 → 191
      Homeobox; Homeobox domain
      pfam03826
      Location:294 → 310
      OAR; OAR domain
    Nucleotide Protein Strain
    Heading Accession and Version

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