U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    selenbp1.S selenium binding protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 447027, updated on 6-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    selenbp1.S
    Official Full Name
    selenium binding protein 1 S homeolog
    Primary source
    Xenbase:XB-GENE-6254577
    Locus tag
    XELAEV_18042984mg
    See related
    EnsemblRapid:ENSXLAG00005008864
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    MTO; hsbp; lpsb; sp56; sbp56; selenbp1; selenbp1-a; selenbp1-b
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 8S
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (102901240..102913105)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (97916961..97928806)

    Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene cingulin S homeolog Neighboring gene proteasome subunit beta 4 S homeolog Neighboring gene regulatory factor X5 S homeolog Neighboring gene phosphatidylinositol 4-kinase, catalytic, beta S homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC82850

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables methanethiol oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables selenium binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    methanethiol oxidase
    Names
    selenium-binding protein 1-B
    NP_001087138.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093669.1 → NP_001087138.1  methanethiol oxidase

      See identical proteins and their annotated locations for NP_001087138.1

      Status: PROVISIONAL

      Source sequence(s)
      BC078056
      UniProtKB/Swiss-Prot
      Q6DCH7
      UniProtKB/TrEMBL
      A0A974C4Y1, A0A974C585
      Related
      ENSXLAP00005025829.1, ENSXLAT00005026541.1
      Conserved Domains (2) summary
      pfam05694
      Location:7 → 472
      SBP56; 56kDa selenium binding protein (SBP56)
      sd00042
      Location:315 → 350
      LVIVD; LVIVD repeat [structural motif]

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      102901240..102913105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DCH7.1 GenPept UniProtKB/Swiss-Prot:Q6DCH7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.