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    napb.S NSF attachment protein beta S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446832, updated on 18-Sep-2024

    Summary

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    Official Symbol
    napb.S
    Official Full Name
    NSF attachment protein beta S homeolog
    Primary source
    Xenbase:XB-GENE-6255104
    Locus tag
    XELAEV_18042556mg
    See related
    EnsemblRapid:ENSXLAG00005009052
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    napb
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    Genomic context

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    See napb.S in Genome Data Viewer
    Location:
    chromosome: 8S
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (85538220..85558395)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (83169506..83181928)

    Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene gap junction delta-2 protein Neighboring gene EH domain containing 2 S homeolog Neighboring gene BRD4 interacting chromatin remodelling complex associated protein S homeolog Neighboring gene solute carrier family 8 member A2 S homeolog Neighboring gene Meis homeobox 3 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC80463, MGC80636

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables soluble NSF attachment protein activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within SNARE complex disassembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of synaptic vesicle priming IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within synaptic transmission, glutamatergic IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of synaptobrevin 2-SNAP-25-syntaxin-1a complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in terminal bouton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    NSF attachment protein beta S homeolog
    Names
    N-ethylmaleimide-sensitive factor attachment protein, beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093528.1 → NP_001086997.1  NSF attachment protein beta S homeolog

      See identical proteins and their annotated locations for NP_001086997.1

      Status: PROVISIONAL

      Source sequence(s)
      BC077875
      UniProtKB/TrEMBL
      A0A974C4E0, Q6AZJ3
      Related
      ENSXLAP00005026301.1, ENSXLAT00005027034.1
      Conserved Domains (2) summary
      sd00006
      Location:114 → 157
      TPR; TPR repeat [structural motif]
      cd15832
      Location:9 → 287
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      85538220..85558395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041574238.1 → XP_041430172.1  NSF attachment protein beta S homeolog isoform X2

      UniProtKB/TrEMBL
      A0A974C4E0, Q6AZJ3
      Conserved Domains (2) summary
      sd00006
      Location:114 → 157
      TPR; TPR repeat [structural motif]
      cd15832
      Location:9 → 287
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

    2. XM_018232028.2 → XP_018087517.1  NSF attachment protein beta S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TEW1
      Related
      ENSXLAP00005026329.1, ENSXLAT00005027062.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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