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    macrod1.L MACRO domain containing 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 100381041, updated on 11-Apr-2024

    Summary

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    Official Symbol
    macrod1.L
    Official Full Name
    MACRO domain containing 1 L homeolog
    Primary source
    Xenbase:XB-GENE-6252561
    Locus tag
    XELAEV_18022219mg
    See related
    EnsemblRapid:ENSXLAG00005019971
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    lrp16; macrod1
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    Genomic context

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    Location:
    chromosome: 4L
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (26680664..27117167)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (25157538..25593132)

    Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene fermitin family homolog 3 Neighboring gene stress induced phosphoprotein 1 L homeolog Neighboring gene uncharacterized LOC108696717 Neighboring gene fibronectin leucine rich transmembrane protein 1 L homeolog Neighboring gene uncharacterized LOC108713913 Neighboring gene OTU deubiquitinase, ubiquitin aldehyde binding 1 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ADP-ribosylglutamate hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within purine nucleoside metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    MACRO domain containing 1 L homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001174011.1 → NP_001167482.1  MACRO domain containing 1 L homeolog

      See identical proteins and their annotated locations for NP_001167482.1

      Status: PROVISIONAL

      Source sequence(s)
      BC128925
      UniProtKB/TrEMBL
      A1A624
      Related
      ENSXLAP00005058573.1, ENSXLAT00005059976.1
      Conserved Domains (2) summary
      COG2110
      Location:80 → 240
      YmdB; O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain [Translation, ribosomal structure and biogenesis]
      cd02908
      Location:75 → 241
      Macro_Appr_pase_like; Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose ...

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      26680664..27117167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041589107.1 → XP_041445041.1  MACRO domain containing 1 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1MUA0
      Related
      ENSXLAP00005058565.1, ENSXLAT00005059965.1
      Conserved Domains (1) summary
      cd02908
      Location:75 → 241
      Macro_OAADPr_deacetylase; macrodomain, O-acetyl-ADP-ribose (OAADPr) family
    Nucleotide Protein Strain
    Heading Accession and Version

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