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    LOC100195572 LYR motif containing 1 [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100195572, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC100195572
    Gene description
    LYR motif containing 1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    Location:
    chromosome: ssa19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa19 NC_059460.1 (1622858..1631085)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa19 NC_027318.1 (1418920..1427171)

    Chromosome ssa19 - NC_059460.1Genomic Context describing neighboring genes Neighboring gene protein FAM234A-like Neighboring gene katanin-interacting protein-like Neighboring gene cyclin-dependent kinase 5 activator 1-like Neighboring gene DCN1-like protein 3 Neighboring gene ATP-sensitive inward rectifier potassium channel 12-like Neighboring gene mediator of RNA polymerase II transcription subunit 24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LYR motif-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001140601.2 → NP_001134073.1  LYR motif-containing protein 1

      See identical proteins and their annotated locations for NP_001134073.1

      Status: PROVISIONAL

      Source sequence(s)
      BT046331
      UniProtKB/Swiss-Prot
      B5X5L2
      UniProtKB/TrEMBL
      A0A1S2X130
      Conserved Domains (1) summary
      pfam05347
      Location:7 → 71
      Complex1_LYR; Complex 1 protein (LYR family)

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059460.1 Reference Ssal_v3.1

      Range
      1622858..1631085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014156896.2 → XP_014012371.1  LYR motif-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      B5X5L2
      UniProtKB/TrEMBL
      A0A1S2X130
      Conserved Domains (1) summary
      pfam05347
      Location:7 → 71
      Complex1_LYR; Complex 1 protein (LYR family)
    Nucleotide Protein
    Heading Accession and Version

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