U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC7487035 zinc finger A20 and AN1 domain-containing stress-associated protein 8 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7487035, updated on 23-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC7487035
    Gene description
    zinc finger A20 and AN1 domain-containing stress-associated protein 8
    Locus tag
    POPTR_001G018600v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC7487035 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (1372334..1374964, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (1354194..1356860, complement)

    Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase UCNL Neighboring gene AP2-like ethylene-responsive transcription factor PLT1 Neighboring gene serine/threonine-protein kinase Nek6 Neighboring gene zinc transporter ZTP29

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger A20 and AN1 domain-containing stress-associated protein 8

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      1372334..1374964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002297747.4 → XP_002297783.1  zinc finger A20 and AN1 domain-containing stress-associated protein 8

      See identical proteins and their annotated locations for XP_002297783.1

      UniProtKB/TrEMBL
      A9P8S9
      Conserved Domains (3) summary
      smart00154
      Location:113 → 150
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:16 → 39
      zf-A20; A20-like zinc finger
      cl18962
      Location:18 → 113
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...

    2. XM_024600640.2 → XP_024456408.1  zinc finger A20 and AN1 domain-containing stress-associated protein 8

      UniProtKB/TrEMBL
      A9P8S9
      Conserved Domains (3) summary
      smart00154
      Location:113 → 150
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:16 → 39
      zf-A20; A20-like zinc finger
      cl18962
      Location:18 → 113
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases