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    TRM18 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 6241019, updated on 15-Feb-2024

    Summary

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    Gene symbol
    TRM18
    Gene description
    Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein
    Primary source
    Araport:AT2G39435
    Locus tag
    AT2G39435
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TON1 Recruiting Motif 18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (16464414..16467033, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Disease resistance-responsive (dirigent-like protein) family protein Neighboring gene ribonuclease H2 subunit C-like protein Neighboring gene Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125004.5
    NM_001336776.1
    NM_001336777.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein
    NP_001118476.1
    • Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001189712.1
    • Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53540.1).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16464414..16467033 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202783.1 → NP_001189712.1  Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189712.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F0A6, F4IV00
      Conserved Domains (1) summary
      pfam14309
      Location:314 → 450
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_001336774.1 → NP_001324861.1  Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F0A6, A0A7G2EGR0, Q0WT61
      Conserved Domains (1) summary
      pfam14309
      Location:312 → 459
      DUF4378; Domain of unknown function (DUF4378)

    3. NM_001336775.1 → NP_001324860.1  Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F0A6, A0A7G2EGR0, Q0WT61
      Conserved Domains (1) summary
      pfam14309
      Location:312 → 459
      DUF4378; Domain of unknown function (DUF4378)

    4. NM_001125004.5 → NP_001118476.1  Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118476.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F0A6, A0A7G2EGR0, Q0WT61
      Conserved Domains (1) summary
      pfam14309
      Location:312 → 459
      DUF4378; Domain of unknown function (DUF4378)

    5. NM_001336777.1 → NP_001324858.1  Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F0A6, A0A7G2EGR0, Q0WT61
      Conserved Domains (1) summary
      pfam14309
      Location:312 → 459
      DUF4378; Domain of unknown function (DUF4378)

    6. NM_001336776.1 → NP_001324859.1  Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F0A6, A0A7G2EGR0, Q0WT61
      Conserved Domains (1) summary
      pfam14309
      Location:312 → 459
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
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