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    AT1G69900 Actin cross-linking protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843326, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G69900
    Gene description
    Actin cross-linking protein
    Primary source
    Araport:AT1G69900
    Locus tag
    AT1G69900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17F3.7; T17F3_7
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    Genomic context

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    See AT1G69900 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (26326216..26327965, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene thioredoxin H-type 8 Neighboring gene actin cross-linking protein (DUF569) Neighboring gene Protein kinase superfamily protein Neighboring gene glutathione S-transferase TAU 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_105658.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Actin cross-linking protein
    NP_177148.2
    • Actin cross-linking protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Actin cross-linking protein (TAIR:AT1G27100.1); Has 330 Blast hits to 179 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26326216..26327965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105658.4 → NP_177148.2  Actin cross-linking protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177148.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EP39, Q4PSX0, Q6E284
      Conserved Domains (2) summary
      pfam04601
      Location:1 → 144
      DUF569; Domain of unknown function (DUF569)
      cl23781
      Location:241 → 383
      Fascin; Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an ...
    Nucleotide Protein
    Heading Accession and Version

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